pandasgwas.utility

clear_cache 

clear_cache() -> None

Clear cache of API requests.

Returns:
  • None –

    None

get_child_efo 

get_child_efo(
    efo_id: str, interactive: bool = True
) -> List[str]

Get all child terms of this trait in the EFO hierarchy

from pandasgwas import get_child_efo
child_list1=get_child_efo('EFO_0004884')#['EFO_0009393']
child_list2=get_child_efo('EFO_0005299')#[]
child_list3=get_child_efo('EFO_0009640')#['EFO_0600083', 'EFO_0005606', 'EFO_0008346', 'EFO_0006953']
Parameters:
  • efo_id (str) –

    EFO identifiers

  • interactive (bool, default: True ) –

    Indicates whether to run in interactive mode, when the value is True and the query data is divided into many pages, the function will prompt whether to continue the download.
Returns:
  • List[str] –

    EFO identifiers

is_API_available 

is_API_available() -> bool

Test if the API is available. If the return value is not True, it means that the API is not available.

from pandasgwas import is_API_available
is_available = is_API_available()
Returns:
  • bool –

    True or False